Claw2Bio bulk-RNA-seq QC summary
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Input: examples/3_example_GSE167882_paired-symbol-logcpm-human/input/GSE167882_ensembl_expression_matrix.csv
Genes: 15504 before / 3164 after filtering
Samples: 21
Groups:
group
       health mid-treatment pre-treatment 
            6             7             8 

Library sizes:
                                 sample         group library_size
Subject 1 - CSU v3   Subject 1 - CSU v3 pre-treatment     38247.51
Subject 1 - CSU v6   Subject 1 - CSU v6 mid-treatment     38084.39
Subject 2 - CSU v3   Subject 2 - CSU v3 pre-treatment     38318.14
Subject 2 - CSU v6   Subject 2 - CSU v6 mid-treatment     38146.34
Subject 3 - CSU v3   Subject 3 - CSU v3 pre-treatment     38391.10
Subject 3 - CSU v6   Subject 3 - CSU v6 mid-treatment     37979.94
Subject 4 - CSU v3   Subject 4 - CSU v3 pre-treatment     38012.78
Subject 4 - CSU v6   Subject 4 - CSU v6 mid-treatment     38076.40
Subject 1 - non-CSU Subject 1 - non-CSU        health     38011.15
Subject 2 - non-CSU Subject 2 - non-CSU        health     38155.64
Subject 3 - non-CSU Subject 3 - non-CSU        health     37878.22
Subject 4 - non-CSU Subject 4 - non-CSU        health     37894.33
Subject 5 - non CSU Subject 5 - non CSU        health     38280.12
Subject 6 - non CSU Subject 6 - non CSU        health     38329.06
Subject 5 - CSU v3   Subject 5 - CSU v3 pre-treatment     38488.50
Subject 5 - CSU v6   Subject 5 - CSU v6 mid-treatment     38413.80
Subject 6 - CSU v3   Subject 6 - CSU v3 pre-treatment     38515.69
Subject 6 - CSU v6   Subject 6 - CSU v6 mid-treatment     38149.06
Subject 7 - CSU v3   Subject 7 - CSU v3 pre-treatment     38346.92
Subject 7 - CSU v6   Subject 7 - CSU v6 mid-treatment     38074.95
Subject 8 - CSU v3   Subject 8 - CSU v3 pre-treatment     37989.49

PCA variance explained: PC1 57.6%, PC2 9.0%

Suspected outlier samples (REPORT ONLY -- nothing was excluded):
  - Subject 6 - non CSU (group health, mean within-group r = 0.76) 
